1 00:00:09,460 --> 00:00:08,260 this was really a fun presentation for 2 00:00:12,220 --> 00:00:09,470 me to make cuz i get to tell you about 3 00:00:13,840 --> 00:00:12,230 all the cool stuff with bacteria and 4 00:00:15,640 --> 00:00:13,850 archaea and not just the cool stuff that 5 00:00:18,190 --> 00:00:15,650 i found so thank you for that 6 00:00:20,380 --> 00:00:18,200 opportunity and my goal for this 7 00:00:22,120 --> 00:00:20,390 presentation is to not you know tell you 8 00:00:23,830 --> 00:00:22,130 everything cool that i know about 9 00:00:25,900 --> 00:00:23,840 bacteria it's to kind of get you to 10 00:00:28,599 --> 00:00:25,910 think like a biologist for the day so 11 00:00:34,120 --> 00:00:28,609 you're following along think how would a 12 00:00:35,770 --> 00:00:34,130 biologist think and so the two types of 13 00:00:38,440 --> 00:00:35,780 organisms that kind of exist on earth 14 00:00:40,630 --> 00:00:38,450 are the prokaryotes and eukaryotes and 15 00:00:42,340 --> 00:00:40,640 most of the time I think all of the time 16 00:00:44,470 --> 00:00:42,350 this afternoon we'll be talking about 17 00:00:46,840 --> 00:00:44,480 the prokaryotes the bacteria and the 18 00:00:48,640 --> 00:00:46,850 archaea and the main differences between 19 00:00:50,110 --> 00:00:48,650 these two organisms and you can see 20 00:00:52,450 --> 00:00:50,120 there's actually a lot of similarity 21 00:00:53,710 --> 00:00:52,460 everything has a plasma membrane to keep 22 00:00:55,300 --> 00:00:53,720 it all together and keep all the 23 00:00:57,820 --> 00:00:55,310 interesting stuff together and doing 24 00:01:00,700 --> 00:00:57,830 interesting things it has a cytoplasm 25 00:01:02,370 --> 00:01:00,710 which you know allows is the lubricant 26 00:01:05,079 --> 00:01:02,380 that allows everything to work together 27 00:01:06,760 --> 00:01:05,089 everything has DNA but the main 28 00:01:09,700 --> 00:01:06,770 difference between the prokaryotes and 29 00:01:11,350 --> 00:01:09,710 eukaryotes is that the DNA and the 30 00:01:13,180 --> 00:01:11,360 prokaryotes just kind of bundles 31 00:01:15,730 --> 00:01:13,190 together in the middle in the nucleoid 32 00:01:17,770 --> 00:01:15,740 region whereas in the eukaryotes like us 33 00:01:19,270 --> 00:01:17,780 you actually have a nucleus and this has 34 00:01:22,960 --> 00:01:19,280 a lot of implications for further 35 00:01:24,610 --> 00:01:22,970 processing and for how RNA works but 36 00:01:28,690 --> 00:01:24,620 again the end of the day it's very 37 00:01:33,510 --> 00:01:28,700 similar and it has the ribosomes both 38 00:01:36,100 --> 00:01:33,520 everything we know of has ribosomes so 39 00:01:39,490 --> 00:01:36,110 secondary of life for the day we have 40 00:01:40,960 --> 00:01:39,500 the you care eukaryotes up here and the 41 00:01:43,630 --> 00:01:40,970 bacteria archaea which are your 42 00:01:45,399 --> 00:01:43,640 prokaryotes now within the bacteria you 43 00:01:47,260 --> 00:01:45,409 kind of have the siano bacteria and 44 00:01:49,180 --> 00:01:47,270 those are your photo synthesizers and 45 00:01:51,580 --> 00:01:49,190 you have the heterotrophic bacteria and 46 00:01:53,110 --> 00:01:51,590 those are the things that eat sugars 47 00:01:55,960 --> 00:01:53,120 that are already kicking around and I'm 48 00:01:57,910 --> 00:01:55,970 going to talk quite a bit about this so 49 00:01:59,890 --> 00:01:57,920 just a kind of introduction like what 50 00:02:01,960 --> 00:01:59,900 are bacteria doing you have grand 51 00:02:03,340 --> 00:02:01,970 positive and gram negative and this all 52 00:02:05,560 --> 00:02:03,350 has to do with the structure of their 53 00:02:07,450 --> 00:02:05,570 cell wall and the reaction to a Gram 54 00:02:09,490 --> 00:02:07,460 stain which is a technique that almost 55 00:02:11,979 --> 00:02:09,500 every microbiologist is used at some 56 00:02:13,449 --> 00:02:11,989 point and if you're a bacteriologist you 57 00:02:15,250 --> 00:02:13,459 have a favorite grand positive 58 00:02:18,789 --> 00:02:15,260 gram-negative and i'm a grand positive 59 00:02:19,809 --> 00:02:18,799 person some are extremely files so they 60 00:02:22,630 --> 00:02:19,819 like the really extra 61 00:02:24,789 --> 00:02:22,640 conditions that's probably what we're 62 00:02:27,789 --> 00:02:24,799 mainly talking about today again 63 00:02:30,250 --> 00:02:27,799 cyanobacteria photosynthesize and some 64 00:02:32,979 --> 00:02:30,260 can be aerobic and some can be anaerobic 65 00:02:35,800 --> 00:02:32,989 which has gotten lost in translation on 66 00:02:37,449 --> 00:02:35,810 here but the archaea are neither 67 00:02:39,099 --> 00:02:37,459 grandpa's it over gram-negative they 68 00:02:41,259 --> 00:02:39,109 have a kind of a different structures to 69 00:02:43,539 --> 00:02:41,269 their cell walls and dope tend to react 70 00:02:45,909 --> 00:02:43,549 the same way to gram stains a lot of 71 00:02:48,369 --> 00:02:45,919 them are extreme of files and there's a 72 00:02:51,879 --> 00:02:48,379 super huge variety of metabolic 73 00:02:54,819 --> 00:02:51,889 activities for the archaea so the 74 00:02:57,699 --> 00:02:54,829 prokaryotic life cycle unlike our own is 75 00:02:59,470 --> 00:02:57,709 very rarely sexual sometimes you can get 76 00:03:01,839 --> 00:02:59,480 conjugation and transferring things 77 00:03:04,599 --> 00:03:01,849 around but most of the time you just get 78 00:03:07,270 --> 00:03:04,609 this binary fusion so basically that 79 00:03:08,860 --> 00:03:07,280 starts with you have your DNA you might 80 00:03:10,959 --> 00:03:08,870 have a plasmid or two or three or four 81 00:03:12,520 --> 00:03:10,969 kicking around in there you have a lot 82 00:03:14,949 --> 00:03:12,530 of ribosomes which you're doing their 83 00:03:16,990 --> 00:03:14,959 thing carrying out translation making 84 00:03:19,420 --> 00:03:17,000 proteins and then eventually when the 85 00:03:22,030 --> 00:03:19,430 cell is ready to divide you get DNA 86 00:03:24,490 --> 00:03:22,040 making more DNA copies itself the cells 87 00:03:27,939 --> 00:03:24,500 start to pull apart and a little more 88 00:03:29,890 --> 00:03:27,949 and eventually you get this total fusion 89 00:03:33,009 --> 00:03:29,900 of two different cellular membranes and 90 00:03:35,619 --> 00:03:33,019 then your peptidoglycan cleaves apart 91 00:03:37,749 --> 00:03:35,629 you have two cells and this looks really 92 00:03:39,699 --> 00:03:37,759 simple but this in itself is a process I 93 00:03:42,729 --> 00:03:39,709 don't think we have a full understanding 94 00:03:44,589 --> 00:03:42,739 of yet so kind of just gives you a key 95 00:03:49,330 --> 00:03:44,599 into how complex this actually is is 96 00:03:50,589 --> 00:03:49,340 that we still don't understand this so 97 00:03:51,939 --> 00:03:50,599 I'm going to talk a bit about the 98 00:03:53,349 --> 00:03:51,949 central dogma too and we've already 99 00:03:55,629 --> 00:03:53,359 heard about that but I'm going to talk 100 00:03:57,640 --> 00:03:55,639 about it in the context of what can we 101 00:04:00,369 --> 00:03:57,650 use each of these molecules for to tell 102 00:04:03,189 --> 00:04:00,379 us more about biology so you have DNA 103 00:04:05,770 --> 00:04:03,199 DNA replication and just having DNA 104 00:04:07,599 --> 00:04:05,780 kicking around you can do almost an 105 00:04:09,459 --> 00:04:07,609 infinite amount of experiments and learn 106 00:04:11,259 --> 00:04:09,469 almost an infinite amount of things from 107 00:04:12,809 --> 00:04:11,269 DNA but some of the things that we're 108 00:04:15,899 --> 00:04:12,819 going to hear about this afternoon is 109 00:04:18,819 --> 00:04:15,909 16s sequencing so we can take the DNA 110 00:04:20,680 --> 00:04:18,829 sequence the 16s gene which everything 111 00:04:22,510 --> 00:04:20,690 has everything has a ribosome I 112 00:04:24,040 --> 00:04:22,520 shouldn't say that that the 16s gene is 113 00:04:27,820 --> 00:04:24,050 actually coding for part of the ribosome 114 00:04:29,890 --> 00:04:27,830 and if you sequence this as a population 115 00:04:31,870 --> 00:04:29,900 you can get a really good sense of all 116 00:04:33,710 --> 00:04:31,880 the bacteria that are in that area and 117 00:04:35,750 --> 00:04:33,720 this is an incredibly 118 00:04:38,090 --> 00:04:35,760 important thing to know because we can 119 00:04:39,650 --> 00:04:38,100 kind of learn about that environment 120 00:04:42,320 --> 00:04:39,660 what kind of life that environment 121 00:04:45,170 --> 00:04:42,330 supports and since we can't culture all 122 00:04:48,410 --> 00:04:45,180 bacteria we can culture about 1% give or 123 00:04:50,690 --> 00:04:48,420 take this is sequencing is very 124 00:04:53,030 --> 00:04:50,700 important we can also sequence 125 00:04:54,980 --> 00:04:53,040 everything so not just the ribosome we 126 00:04:56,930 --> 00:04:54,990 can sequence all of the genes in an area 127 00:04:58,940 --> 00:04:56,940 and this gives us a really good idea of 128 00:05:01,030 --> 00:04:58,950 not what's going on but what could 129 00:05:03,520 --> 00:05:01,040 potentially go on so what that 130 00:05:08,660 --> 00:05:03,530 environment has the potential for doing 131 00:05:10,760 --> 00:05:08,670 metabolically or evolutionarily so DNA 132 00:05:13,970 --> 00:05:10,770 which we've already heard can be 133 00:05:16,130 --> 00:05:13,980 transcribed into RNA and if you want to 134 00:05:18,080 --> 00:05:16,140 look at the RNA of a population you can 135 00:05:19,910 --> 00:05:18,090 learn slightly different things so you 136 00:05:22,100 --> 00:05:19,920 can look at all of the RNA in an area 137 00:05:24,410 --> 00:05:22,110 and something called transcriptomics and 138 00:05:26,540 --> 00:05:24,420 that tells us about what the bugs in 139 00:05:29,390 --> 00:05:26,550 that area are actually doing so what 140 00:05:32,300 --> 00:05:29,400 part of the genome is active in a 141 00:05:35,420 --> 00:05:32,310 certain area you can also do something 142 00:05:38,840 --> 00:05:35,430 called 16s rrna so instead of sequencing 143 00:05:40,760 --> 00:05:38,850 the RNA from the DNA you're going to 144 00:05:44,000 --> 00:05:40,770 take the RNA directly and sequence that 145 00:05:46,490 --> 00:05:44,010 so DNA is fairly stable you can abuse it 146 00:05:49,159 --> 00:05:46,500 and use it and get a lot of information 147 00:05:50,600 --> 00:05:49,169 out of it RNA is not you look it up the 148 00:05:54,080 --> 00:05:50,610 wrong way in the lab and it just goes 149 00:05:56,330 --> 00:05:54,090 away on you so it might be the same 150 00:05:59,000 --> 00:05:56,340 thing in the environment so this might 151 00:06:01,640 --> 00:05:59,010 tell us what portion of a population is 152 00:06:02,960 --> 00:06:01,650 alive as opposed to what's there or what 153 00:06:06,680 --> 00:06:02,970 has ever been there because DNA is 154 00:06:08,659 --> 00:06:06,690 stable and then you can also once you've 155 00:06:10,520 --> 00:06:08,669 got into translation and you have some 156 00:06:12,350 --> 00:06:10,530 protein kicking around you can also do 157 00:06:14,270 --> 00:06:12,360 proteomics and you can do that in the 158 00:06:15,409 --> 00:06:14,280 environment and see what proteins are 159 00:06:17,510 --> 00:06:15,419 happening and what's happening 160 00:06:19,700 --> 00:06:17,520 metabolically in an area but you can 161 00:06:21,620 --> 00:06:19,710 also do that in the lab and look at what 162 00:06:22,880 --> 00:06:21,630 different bacteria are doing 163 00:06:24,980 --> 00:06:22,890 metabolically under different conditions 164 00:06:27,020 --> 00:06:24,990 that you can grow them in provide it you 165 00:06:28,310 --> 00:06:27,030 can grow those bacteria so we'll 166 00:06:34,500 --> 00:06:28,320 probably hear about all these things 167 00:06:41,520 --> 00:06:37,170 okay so what do bacteria need and 168 00:06:44,790 --> 00:06:41,530 bacteria need a lot this is dumb down to 169 00:06:46,920 --> 00:06:44,800 a very simple idea but they need 170 00:06:48,960 --> 00:06:46,930 essential elements so they need carbon 171 00:06:51,390 --> 00:06:48,970 they need iron I don't think we found 172 00:06:53,910 --> 00:06:51,400 anything yet that doesn't need iron they 173 00:06:55,650 --> 00:06:53,920 need nitrogen things like that most 174 00:06:58,320 --> 00:06:55,660 things need water I think everything we 175 00:07:00,660 --> 00:06:58,330 know of needs water right now energy of 176 00:07:02,370 --> 00:07:00,670 course they have to get stuff done and a 177 00:07:04,110 --> 00:07:02,380 lot of them have special adaptations to 178 00:07:06,980 --> 00:07:04,120 survive so I'm going to talk about that 179 00:07:09,180 --> 00:07:06,990 a little bit so growth in respiration 180 00:07:11,160 --> 00:07:09,190 basically just like us you need 181 00:07:14,340 --> 00:07:11,170 something to eat and you need something 182 00:07:17,220 --> 00:07:14,350 to breathe and I would say that there's 183 00:07:18,690 --> 00:07:17,230 unlimited ways of doing this you can 184 00:07:20,070 --> 00:07:18,700 count up all the ways we know about what 185 00:07:23,400 --> 00:07:20,080 we probably haven't scratched the 186 00:07:25,770 --> 00:07:23,410 surface so if you need organic carbon to 187 00:07:28,260 --> 00:07:25,780 eat like we do you're heterotroph or 188 00:07:31,860 --> 00:07:28,270 some things can make their own organic 189 00:07:34,470 --> 00:07:31,870 carbon and that's an autotroph and if 190 00:07:36,690 --> 00:07:34,480 you use oxygen if you breathe oxygen 191 00:07:39,510 --> 00:07:36,700 you're in anaerobe and if you breathe 192 00:07:41,820 --> 00:07:39,520 something other than oxygen sorry if you 193 00:07:43,410 --> 00:07:41,830 breathe oxygen you're an arrow if you've 194 00:07:45,390 --> 00:07:43,420 read something other than oxygen you're 195 00:07:48,030 --> 00:07:45,400 in anaerobe so you're going to hear a 196 00:07:49,620 --> 00:07:48,040 lot of terms probably this is just an 197 00:07:51,120 --> 00:07:49,630 example and these can get long and 198 00:07:52,620 --> 00:07:51,130 confusing but just kind of break it down 199 00:07:55,710 --> 00:07:52,630 to their terms think about it that way 200 00:07:58,680 --> 00:07:55,720 so a chemo autotroph is something that 201 00:08:03,360 --> 00:07:58,690 can fix its own carbon so it's not 202 00:08:07,500 --> 00:08:03,370 eating things and it's chemo so it's 203 00:08:13,740 --> 00:08:07,510 breathing chemicals oh I've lost all my 204 00:08:15,060 --> 00:08:13,750 pictures that's not good anyways so 205 00:08:20,060 --> 00:08:15,070 there was a picture of a kid here eating 206 00:08:22,890 --> 00:08:20,070 cereal and he is a heterotrophic Arab 207 00:08:24,930 --> 00:08:22,900 because he eats a sugar you know the 208 00:08:27,870 --> 00:08:24,940 nice sugary cereal and he breathes 209 00:08:30,390 --> 00:08:27,880 oxygen and a lot of bacteria do this too 210 00:08:33,210 --> 00:08:30,400 and after he's done eating a cereal and 211 00:08:36,870 --> 00:08:33,220 breathing here aspires co2 and the sugar 212 00:08:40,380 --> 00:08:36,880 well you know what happens with that now 213 00:08:43,350 --> 00:08:40,390 I had some pictures back so another way 214 00:08:46,410 --> 00:08:43,360 of stead of just the basic heterotrophic 215 00:08:49,560 --> 00:08:46,420 in a row and a robe 216 00:08:51,870 --> 00:08:49,570 would be an aerobic so this guy's not 217 00:08:53,970 --> 00:08:51,880 using oxygen and he's making methane and 218 00:08:57,230 --> 00:08:53,980 there are just tons and tons of ways you 219 00:09:00,600 --> 00:08:57,240 can do this and one way is to use 220 00:09:04,800 --> 00:09:00,610 hydrogen and co2 and out of that get 221 00:09:07,139 --> 00:09:04,810 methane and h2o so very interesting the 222 00:09:09,930 --> 00:09:07,149 top metabolism but other ways of making 223 00:09:12,329 --> 00:09:09,940 methane you can make it out of acetate 224 00:09:14,400 --> 00:09:12,339 and if you're eating acetate your osito 225 00:09:19,439 --> 00:09:14,410 trophic or you can make it out of 226 00:09:23,340 --> 00:09:19,449 methane file and you could be methane at 227 00:09:25,920 --> 00:09:23,350 the Thyle trophic and just an 228 00:09:28,470 --> 00:09:25,930 interesting bit of trivia there when you 229 00:09:33,720 --> 00:09:28,480 eat asparagus that's why it stinks when 230 00:09:36,360 --> 00:09:33,730 you pee so you have all these bugs 231 00:09:37,829 --> 00:09:36,370 sitting there making methane when you're 232 00:09:40,470 --> 00:09:37,839 thinking as a biologist you're thinking 233 00:09:41,730 --> 00:09:40,480 what could use that f methane and one of 234 00:09:43,980 --> 00:09:41,740 the things that could use the methane 235 00:09:46,110 --> 00:09:43,990 are the bugs that eat it so those are 236 00:09:48,509 --> 00:09:46,120 the methanol tropes so some guys are 237 00:09:51,360 --> 00:09:48,519 making it some guys are eating it and a 238 00:09:54,360 --> 00:09:51,370 really nice example of this is actually 239 00:09:56,220 --> 00:09:54,370 in the permafrost so down deep where you 240 00:09:58,370 --> 00:09:56,230 have anaerobic conditions you have a 241 00:10:00,810 --> 00:09:58,380 nice little community of methanogens 242 00:10:02,880 --> 00:10:00,820 pumping out the methane but if you go 243 00:10:05,069 --> 00:10:02,890 higher up in the soil level where you 244 00:10:06,660 --> 00:10:05,079 get some oxygen mixed in you can have a 245 00:10:09,210 --> 00:10:06,670 nice little population of nathanael 246 00:10:11,730 --> 00:10:09,220 troves eating what the banana jeans made 247 00:10:13,530 --> 00:10:11,740 another way of thinking like a biologist 248 00:10:17,009 --> 00:10:13,540 what makes it and what can eat it and 249 00:10:20,329 --> 00:10:17,019 you might find them living together so 250 00:10:22,829 --> 00:10:20,339 another way of eating and breathing are 251 00:10:24,509 --> 00:10:22,839 photosynthetic autotrophs so these guys 252 00:10:26,579 --> 00:10:24,519 are using the Sun to make their own 253 00:10:28,860 --> 00:10:26,589 sugars so they're fixing carbon so you 254 00:10:34,519 --> 00:10:28,870 see the carving coming in oxygen coming 255 00:10:37,230 --> 00:10:34,529 out sugar is coming out my slides aren't 256 00:10:39,329 --> 00:10:37,240 translating that great but so extrema 257 00:10:40,590 --> 00:10:39,339 files are basically what we're talking 258 00:10:43,110 --> 00:10:40,600 about this afternoon and there any 259 00:10:45,180 --> 00:10:43,120 organism that's able to you know live 260 00:10:48,360 --> 00:10:45,190 maybe not thrive but survive in 261 00:10:53,490 --> 00:10:48,370 conditions that are normally fatal to 262 00:10:55,050 --> 00:10:53,500 anything that's not an extremal file so 263 00:10:56,730 --> 00:10:55,060 you're going to hear all kind of terms 264 00:10:58,590 --> 00:10:56,740 about what kind of extrema file these 265 00:10:59,970 --> 00:10:58,600 guys actually are so you can have 266 00:11:01,740 --> 00:10:59,980 thermophiles 267 00:11:05,610 --> 00:11:01,750 these guys live at high temperatures and 268 00:11:08,490 --> 00:11:05,620 it says 45 and it says 122 over here so 269 00:11:11,520 --> 00:11:08,500 high temperature guys crile files are 270 00:11:14,220 --> 00:11:11,530 anything that can survive at minus 15 271 00:11:16,530 --> 00:11:14,230 for a given length of time hypo lists 272 00:11:19,080 --> 00:11:16,540 are anything that can live it in rocks 273 00:11:20,760 --> 00:11:19,090 and cold deserts so very extreme 274 00:11:23,250 --> 00:11:20,770 condition there and then you can also 275 00:11:27,630 --> 00:11:23,260 you know combined any of these things to 276 00:11:29,370 --> 00:11:27,640 make other Oh files so a thermo acidify 277 00:11:31,200 --> 00:11:29,380 ille as an example of when we combine 278 00:11:36,420 --> 00:11:31,210 things and these guys can survive 279 00:11:37,890 --> 00:11:36,430 thermophilic and high acid conditions so 280 00:11:39,540 --> 00:11:37,900 another way of instead of you know 281 00:11:41,730 --> 00:11:39,550 having adaptations which I'm going to 282 00:11:43,800 --> 00:11:41,740 talk about in a minute is just go on 283 00:11:46,530 --> 00:11:43,810 strike you know I'm not working anymore 284 00:11:48,330 --> 00:11:46,540 until conditions improve and bacteria do 285 00:11:50,310 --> 00:11:48,340 this and it's called sporulation so they 286 00:11:52,440 --> 00:11:50,320 pack up some of their genetic material 287 00:11:54,900 --> 00:11:52,450 and they quit working until they get 288 00:11:58,260 --> 00:11:54,910 better conditions and this is a nice 289 00:11:59,670 --> 00:11:58,270 little process and it's a great way 290 00:12:02,820 --> 00:11:59,680 spores can survive almost anything 291 00:12:07,710 --> 00:12:02,830 spores can survive on Mars good way of 292 00:12:11,010 --> 00:12:07,720 surviving so adaptations are a huge 293 00:12:14,360 --> 00:12:11,020 field in extremo file biology what kind 294 00:12:16,530 --> 00:12:14,370 of traits allow you to survive and 295 00:12:17,910 --> 00:12:16,540 identifying these figuring out how they 296 00:12:20,370 --> 00:12:17,920 work and figuring out what all they can 297 00:12:21,990 --> 00:12:20,380 do is a huge part of this field so I'm 298 00:12:24,420 --> 00:12:22,000 just going to talk about this for a 299 00:12:26,660 --> 00:12:24,430 little bit so temperature extremes I 300 00:12:29,220 --> 00:12:26,670 can't obviously go through all of the 301 00:12:30,780 --> 00:12:29,230 adaptations to extreme environments so 302 00:12:32,220 --> 00:12:30,790 I'm going to hit on thermo files and 303 00:12:36,180 --> 00:12:32,230 psycho files and we can kind of compare 304 00:12:38,190 --> 00:12:36,190 and contrast these two so thermophiles 305 00:12:40,380 --> 00:12:38,200 are things that are surviving up here 306 00:12:42,800 --> 00:12:40,390 and you can see if everything grew and 307 00:12:44,640 --> 00:12:42,810 divided at the same rate you know 308 00:12:47,100 --> 00:12:44,650 extrapolate it from the Arrhenius plot 309 00:12:48,690 --> 00:12:47,110 that you'd expect based on the things 310 00:12:50,520 --> 00:12:48,700 that are kind of in the middle you can 311 00:12:52,920 --> 00:12:50,530 see they be growing a lot faster up here 312 00:12:54,810 --> 00:12:52,930 at high temperatures and a lot faster at 313 00:12:56,610 --> 00:12:54,820 low temperatures but there's this place 314 00:12:58,620 --> 00:12:56,620 here where things kind of drop off at 315 00:13:00,510 --> 00:12:58,630 high temperatures and drop off here at 316 00:13:02,280 --> 00:13:00,520 low temperatures and basically what's 317 00:13:03,960 --> 00:13:02,290 happening there is your enzymes just 318 00:13:05,430 --> 00:13:03,970 aren't working as they should there be 319 00:13:11,740 --> 00:13:05,440 coming to nature they can't find their 320 00:13:14,660 --> 00:13:11,750 substrate so things drop off 321 00:13:16,190 --> 00:13:14,670 so cold air freezing temperatures will 322 00:13:18,620 --> 00:13:16,200 do a ton of things that aren't so good 323 00:13:20,990 --> 00:13:18,630 for the cells they'll freeze your cell 324 00:13:26,660 --> 00:13:21,000 membranes they'll cause gelling they can 325 00:13:29,180 --> 00:13:26,670 decrease your enzyme activity you'll see 326 00:13:32,360 --> 00:13:29,190 that a lot of the times your DNA needs 327 00:13:35,930 --> 00:13:32,370 to pull apart for DNA replication or RNA 328 00:13:37,370 --> 00:13:35,940 transcription and it won't do that just 329 00:13:40,310 --> 00:13:37,380 because the temperatures are too cold 330 00:13:41,900 --> 00:13:40,320 and you can also get ice crystals 331 00:13:43,639 --> 00:13:41,910 forming that disrupt your cellular 332 00:13:46,699 --> 00:13:43,649 membrane on these cold temperatures 333 00:13:48,170 --> 00:13:46,709 whereas it hot temperatures you have a 334 00:13:50,750 --> 00:13:48,180 cell membrane that will just break apart 335 00:13:53,600 --> 00:13:50,760 when the water starts to boil again your 336 00:13:56,480 --> 00:13:53,610 enzymes will decrease in their activity 337 00:13:58,069 --> 00:13:56,490 and your DNA will pull apart because the 338 00:14:00,050 --> 00:13:58,079 temperatures are just too cold for the 339 00:14:03,259 --> 00:14:00,060 bar to form for the bonds to hold it 340 00:14:04,880 --> 00:14:03,269 together and microbial life needs some 341 00:14:06,530 --> 00:14:04,890 form of liquid water so if you're living 342 00:14:09,139 --> 00:14:06,540 at minus 15 you have to have a way to 343 00:14:11,780 --> 00:14:09,149 keep the water liquid and if you're 344 00:14:13,910 --> 00:14:11,790 living it plus 120 you have to keep away 345 00:14:19,150 --> 00:14:13,920 you have to find a way for the water not 346 00:14:22,340 --> 00:14:19,160 to boil off so here you can see how many 347 00:14:24,980 --> 00:14:22,350 slides are really bad I don't know what 348 00:14:27,650 --> 00:14:24,990 happened there the psycho files and the 349 00:14:29,569 --> 00:14:27,660 thermo files so with the psycho files 350 00:14:31,939 --> 00:14:29,579 they have a lot of different ways to 351 00:14:33,380 --> 00:14:31,949 keep their membranes intact and one of 352 00:14:36,290 --> 00:14:33,390 the ways they can do this is increase 353 00:14:38,420 --> 00:14:36,300 the amount of unsaturated fatty acids 354 00:14:41,030 --> 00:14:38,430 and when saturate when acids are 355 00:14:43,340 --> 00:14:41,040 saturated fatty acids they basically are 356 00:14:45,980 --> 00:14:43,350 straight you know there's very strong 357 00:14:48,439 --> 00:14:45,990 order to them but when they're 358 00:14:50,389 --> 00:14:48,449 unsaturated they get these quaint pinks 359 00:14:52,519 --> 00:14:50,399 and twists and turns and bends and this 360 00:14:55,670 --> 00:14:52,529 helps maintain fluidity so you're not 361 00:14:58,250 --> 00:14:55,680 just freezing up and the same is true 362 00:15:00,530 --> 00:14:58,260 the double bonds it allows kinks and 363 00:15:02,269 --> 00:15:00,540 twists and bends whereas the thermo 364 00:15:04,040 --> 00:15:02,279 files have a different way of keeping 365 00:15:06,710 --> 00:15:04,050 their membrane intact at high 366 00:15:10,730 --> 00:15:06,720 temperatures and they have special waxy 367 00:15:12,230 --> 00:15:10,740 chemicals that aren't really the double 368 00:15:15,290 --> 00:15:12,240 layer bar on you'd expect to see and 369 00:15:16,910 --> 00:15:15,300 they actually have so that this is a 370 00:15:19,760 --> 00:15:16,920 normal membrane where you have your 371 00:15:22,370 --> 00:15:19,770 lipid bilayer but a lot of hypothermia 372 00:15:24,290 --> 00:15:22,380 files just kind of bind them together so 373 00:15:25,460 --> 00:15:24,300 there's these bonds that are not as 374 00:15:29,690 --> 00:15:25,470 easily broken 375 00:15:31,460 --> 00:15:29,700 as here and the membrane stays intact so 376 00:15:33,110 --> 00:15:31,470 you also have to maintain enzyme 377 00:15:35,210 --> 00:15:33,120 activity because that's huge right you 378 00:15:37,250 --> 00:15:35,220 gotta carry out your metabolism at these 379 00:15:39,350 --> 00:15:37,260 super high or super low temperatures and 380 00:15:41,930 --> 00:15:39,360 you can basically make your D your 381 00:15:44,600 --> 00:15:41,940 proteins do that in a number of ways so 382 00:15:46,370 --> 00:15:44,610 in cold temperatures everything's really 383 00:15:48,890 --> 00:15:46,380 fluid and it has high catalytic 384 00:15:50,270 --> 00:15:48,900 efficiency what I mean by that is it's 385 00:15:52,130 --> 00:15:50,280 not binding and grabbing and staying 386 00:15:53,600 --> 00:15:52,140 there it's binding and then it's letting 387 00:15:55,460 --> 00:15:53,610 go and then it's binding and then it's 388 00:15:59,330 --> 00:15:55,470 letting go so it can pump through a lot 389 00:16:02,030 --> 00:15:59,340 more substrate you can also have more 390 00:16:03,740 --> 00:16:02,040 polar less hydrophobic amino acids and 391 00:16:05,900 --> 00:16:03,750 this just helps again to keep things 392 00:16:07,460 --> 00:16:05,910 fluid whereas in thermo files you don't 393 00:16:09,290 --> 00:16:07,470 want to keep things fluid you want to 394 00:16:11,030 --> 00:16:09,300 keep things as structured as possible so 395 00:16:13,040 --> 00:16:11,040 it's not melting and pulling apart and 396 00:16:14,720 --> 00:16:13,050 to do this you can pack your proteins 397 00:16:16,790 --> 00:16:14,730 into a dense core and just not let water 398 00:16:20,090 --> 00:16:16,800 in and then they can't boil you apart 399 00:16:22,610 --> 00:16:20,100 you can add these disulfide bonds which 400 00:16:25,220 --> 00:16:22,620 are down here and again it's just 401 00:16:28,130 --> 00:16:25,230 another layer of structure and you can 402 00:16:31,790 --> 00:16:28,140 have charged residues like this that 403 00:16:34,970 --> 00:16:31,800 will form to hydro hydrogen bonds to 404 00:16:36,850 --> 00:16:34,980 keep things just more structured you 405 00:16:39,230 --> 00:16:36,860 also have to keep your DNA together and 406 00:16:42,470 --> 00:16:39,240 that's for hot and you have to let it 407 00:16:43,910 --> 00:16:42,480 pull apart for cold so psycho files 408 00:16:47,420 --> 00:16:43,920 where things don't want to pull apart 409 00:16:50,270 --> 00:16:47,430 you see a lot of 80 bonds and like we 410 00:16:52,760 --> 00:16:50,280 learned earlier 80 forms to hydrogen 411 00:16:56,060 --> 00:16:52,770 bonds where GC forms three so we're just 412 00:16:58,520 --> 00:16:56,070 using more of less hydrogen bond formers 413 00:17:01,100 --> 00:16:58,530 whereas in thermal files you kind of do 414 00:17:02,660 --> 00:17:01,110 the opposite and you can also have you 415 00:17:04,550 --> 00:17:02,670 can make a lot of this DNA guy raised 416 00:17:08,930 --> 00:17:04,560 that twists your DNA it turns it and 417 00:17:11,090 --> 00:17:08,940 keeps it together from pulling apart but 418 00:17:13,880 --> 00:17:11,100 there's still a lot we don't understand 419 00:17:15,740 --> 00:17:13,890 about psycho files thermophiles extreme 420 00:17:17,990 --> 00:17:15,750 files in general and this is a picture 421 00:17:20,870 --> 00:17:18,000 from our lab this is the bug that grows 422 00:17:22,760 --> 00:17:20,880 at minus 15 and you can see it doesn't 423 00:17:24,770 --> 00:17:22,770 look like a normal cell normal cells are 424 00:17:26,450 --> 00:17:24,780 nice and smooth on the outside this guy 425 00:17:29,030 --> 00:17:26,460 is lumpy it's got these weird things 426 00:17:31,040 --> 00:17:29,040 through here and is this some kind of 427 00:17:32,990 --> 00:17:31,050 adaptation that's allowing it to 428 00:17:35,330 --> 00:17:33,000 maintain liquid water possibly on the 429 00:17:36,920 --> 00:17:35,340 outside or is it some adaptation that's 430 00:17:39,320 --> 00:17:36,930 protecting it against something either 431 00:17:41,480 --> 00:17:39,330 salt or cold and answers we just don't 432 00:17:47,419 --> 00:17:41,490 so this could be a whole new adaptation 433 00:17:50,210 --> 00:17:47,429 to the cold I think these are three 434 00:17:52,820 --> 00:17:50,220 cells one two three and this is plano 435 00:17:54,940 --> 00:17:52,830 caucus hollow cryo Phyllis and you'll 436 00:17:57,799 --> 00:17:54,950 hear more about that this afternoon and 437 00:18:00,049 --> 00:17:57,809 I'm going to end with a quote that's not 438 00:18:01,820 --> 00:18:00,059 really fitting on the screen but this is 439 00:18:04,669 --> 00:18:01,830 former prof of mine it's a little crass 440 00:18:06,950 --> 00:18:04,679 so I'm not going to give it to a quoting 441 00:18:08,720 --> 00:18:06,960 a certain person but he said in any 442 00:18:10,970 --> 00:18:08,730 effed up environment on earth you'll 443 00:18:12,470 --> 00:18:10,980 find something living somewhere that's 444 00:18:16,820 --> 00:18:12,480 found something to eat and somehow 445 00:18:18,799 --> 00:18:16,830 survives and it is crass but it's a 446 00:18:20,299 --> 00:18:18,809 beautiful quote because it's true and I 447 00:18:21,529 --> 00:18:20,309 was saying last night that we could 448 00:18:23,389 --> 00:18:21,539 almost have a drinking game at this 449 00:18:25,070 --> 00:18:23,399 conference where every time someone says 450 00:18:27,830 --> 00:18:25,080 life will find a way we all take a shot 451 00:18:30,230 --> 00:18:27,840 and at the end of the conference it 452 00:18:34,700 --> 00:18:30,240 would just be the geologist standing I'm 453 00:18:37,310 --> 00:18:34,710 sure but at the same time it's a really 454 00:18:40,279 --> 00:18:37,320 good message so in a couple years maybe 455 00:18:42,169 --> 00:18:40,289 you know within my lifetime if we don't 456 00:18:44,210 --> 00:18:42,179 find life on another planet I think 457 00:18:46,610 --> 00:18:44,220 it'll mean more to me than if we do 458 00:18:47,899 --> 00:18:46,620 because I can't see how it wouldn't be 459 00:18:51,379 --> 00:18:47,909 on another planet somewhere out there 460 00:19:01,090 --> 00:18:51,389 and if we don't find it you know I might 461 00:19:01,100 --> 00:19:14,890 anybody have questions for Jen 462 00:19:22,070 --> 00:19:19,640 about those sense so what would a normal 463 00:19:23,630 --> 00:19:22,080 one look like normal cells are just 464 00:19:25,460 --> 00:19:23,640 smooth you don't see the bumpiness 465 00:19:27,529 --> 00:19:25,470 circles like lions that look like 466 00:19:35,140 --> 00:19:27,539 spaghetti on the cell surface membrane 467 00:19:38,960 --> 00:19:35,150 just smooth yeah yeah again can you just 468 00:19:40,850 --> 00:19:38,970 you used on several slides and when you 469 00:19:43,850 --> 00:19:40,860 talk you said survive and sometimes 470 00:19:47,299 --> 00:19:43,860 thrive is there a difference I mean for 471 00:19:50,600 --> 00:19:47,309 the sacrifice I mean do you have a 472 00:19:52,190 --> 00:19:50,610 definition for surviving um hard and 473 00:19:55,610 --> 00:19:52,200 fast definitions I think are a little 474 00:19:58,880 --> 00:19:55,620 hard but for example surviving and 475 00:20:01,669 --> 00:19:58,890 thriving the cells i showed you they i 476 00:20:03,409 --> 00:20:01,679 would say thrive where generation x or 477 00:20:05,210 --> 00:20:03,419 maybe a couple minutes to a couple hours 478 00:20:08,060 --> 00:20:05,220 at room temperature with not a lot of 479 00:20:11,060 --> 00:20:08,070 salt whereas you draw from 215 they 480 00:20:13,310 --> 00:20:11,070 survive they make more cells but it's a 481 00:20:16,520 --> 00:20:13,320 lot slower and the cells seem to be more 482 00:20:18,140 --> 00:20:16,530 fragile and I imagine that's kind of the 483 00:20:20,600 --> 00:20:18,150 way those cells would interact with 484 00:20:23,360 --> 00:20:20,610 nature it's things would go very slowly 485 00:20:25,279 --> 00:20:23,370 but they are alive as opposed to in the 486 00:20:26,960 --> 00:20:25,289 lab when we give them an all-you-can-eat 487 00:20:31,430 --> 00:20:26,970 buffet and warm them up they just go to 488 00:20:32,840 --> 00:20:31,440 town would be thriving so I actually 489 00:20:35,090 --> 00:20:32,850 have a question it kind of goes to both 490 00:20:37,580 --> 00:20:35,100 of you since you introduced metabolisms 491 00:20:40,250 --> 00:20:37,590 and you introduced Luca I'm kind of 492 00:20:42,950 --> 00:20:40,260 curious do we have any ideas about early 493 00:20:45,500 --> 00:20:42,960 ecospace as in are these things only 494 00:20:47,210 --> 00:20:45,510 doing one metal like operating on one 495 00:20:49,039 --> 00:20:47,220 metabolic pathway are they taking 496 00:20:51,380 --> 00:20:49,049 advantage of anything that's free have 497 00:20:58,870 --> 00:20:51,390 they differentiated yet into methanogens 498 00:21:04,629 --> 00:21:01,629 I've just noticed people to look into 499 00:21:06,519 --> 00:21:04,639 like that for sure I just don't so when 500 00:21:07,839 --> 00:21:06,529 we're thinking about Luca I mean are we 501 00:21:11,619 --> 00:21:07,849 only thinking about it being trapped to 502 00:21:18,759 --> 00:21:11,629 one locality or do we think it's theirs 503 00:21:19,959 --> 00:21:18,769 eco spaces everywhere I don't say that 504 00:21:23,259 --> 00:21:19,969 Luger you're probably going to be 505 00:21:25,599 --> 00:21:23,269 geographically pretty close because you 506 00:21:27,219 --> 00:21:25,609 know stuff like RNA isn't really stable 507 00:21:29,919 --> 00:21:27,229 so if it's going to be transferring back 508 00:21:31,569 --> 00:21:29,929 and forth it can't go very far so I'd 509 00:21:33,969 --> 00:21:31,579 say yeah I would say species 510 00:21:36,069 --> 00:21:33,979 differentiation at that point you've got 511 00:21:38,139 --> 00:21:36,079 you know Geographic barriers and then 512 00:21:39,639 --> 00:21:38,149 you know lots of different spaces and 513 00:21:41,829 --> 00:21:39,649 stuff like that but at least for 514 00:21:43,779 --> 00:21:41,839 everything up to Luca and Luca probably 515 00:21:47,739 --> 00:21:43,789 had to be pretty close to at least in my 516 00:21:49,269 --> 00:21:47,749 vision I'd agree with that you're 517 00:21:51,249 --> 00:21:49,279 talking about a lot different 518 00:21:55,930 --> 00:21:51,259 environment to a lot harsher than what 519 00:21:59,769 --> 00:21:55,940 we have now is probably any other